This may be asking too much, but I thought it would be cool if you could somehow integrate or link favorites using AD. I say because I have around 200 servers that I would have to add manually and thinking ahead I can see it being sort of a pain to rename / remove servers in favorites to match those renamed or removed from AD.

I connect to more than one domain (test domain at home) at different times so this may need to be considered as well.

Active Directory and NetBIOS discovery will be included in the upcoming Docked Connection Manager. I'll probably add a right-click "save to favorites" option which I think will cover much of your request! I could probably come up with some sort of favorites syncing option but I'll have to think about that to see if there's a clean and useful way to do that. Thanks for the suggestion!